"As for why Shasha and Elan have been affected by the Crystal Dragon... the answer is now clear."
It is evidently because the Dragon Soul Aggregate sensed abnormalities in its own state and required other 'consciousnesses' to help it control additional bodies. Facing a lack of trustworthy entities, it was left with no choice but to choose Shasha, who was nearest, and Elan, who possessed innate Spirit Energy talents.
Simply put, the three Crystalline Dragon Eggs were influenced by the Swarm, underwent soul fusion, and transformed into a unified fused soul.
However, this fused soul remains immature, unaware of how to control the three bodies, and unable to hatch fully on its own—thus it resorted to seeking others to assist in piloting its two vacant bodies for incubation.